miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|47698993|gb|CN803017.1|CN803017 AAAAATTATGGCCCATGAAAGGAGAGAGAAAGTGAAACGGAGCGTCAGCCCTCTCCTGAGTACCCACGTCCTAGGGAAGG
AGAAGATCGCCAGCATGCTGCCGGAGCAGCTCTACTTCCTGCAGAGCCCCCCGGAGGAGGAGCCCGAATACCACCCCGAC
GCCTCGGCCCAAGAATCATTTGCTGTTTCAAATAGAGAACTGTGCGATGATGAGAAAGAGTTCATACATTTTCCAGTATG
TGAGGGGACCTCTCAACCTGAACCCTCGTGTTCAGCTGTCAGAATAACAGCCAATAAAAACTACAGGAGCAAAACCTCTC
AGGAAGGTGCTTTAAAAAAGATGCATGAGGAAGAACACCATCAACAAATGTCCATCTTACAACTGCAACTGATACAAATG
AATGAGGTGCATGTGGCCAAAATCCAGCAGATAGAGCGAGAGTGTGAGATGGCAGAGGAGGAACACAGGATAAAAATGGA
AGTTCTCAATAAAAAGAAGATGTATTGGGAAAGAAAACTACAAACTTTTACCAAGGAATGGCCTGTTTCCTCATTTAACC
GGCCCTTTCCCAATTCGCCCTAAGACTTTGGGGGTGGCTCTCTTGTAATTAATCTGTGTTGGCAAAGAATGTTTGTAACA
TGGACTTGCGGTCAGTAACCTGTAACAGAGCTACAACTACGAAAATTAGAGTGGTAGTAGTCACTTATTTAAGAATTCAT
TCAGGTAAACAGCTGCACCCTCTGTACCCCTTCAGTGGCAAAGGAGCTGTGATAGTCTTCTGAAAATTATCCCTATAAGT
GCTATAATTCTTGAATGTAATGTCCTCTAAATTAAAAATTCATAACAAGAACCCCGGGGGAATGGTTGTTTGTTTTTGTT
TTGTTGGGTTTTTTGTTTTTTTGTTTTTTTAAACCCAAGGGCAAGGGGAACAATAAAAAAAAAAAAAAAAAC




Most similar to sp|Q96H12|CI030_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q96H12|CI030_HUMAN UPF0439 protein C9orf30 OS=Homo sapiens
           GN=C9orf30 PE=1 SV=1
          Length = 275

 Score =  343 bits (880), Expect = 1e-93
 Identities = 170/193 (88%), Positives = 170/193 (88%)
 Frame = +2

Query: 2   KIMAHERREKVKRSVSPLLSTHVLGKEKIASMLPEQLYFLQSPPEEEPEYHPDASAQESF 181
           KIMAHERREKVKRSVSPLLSTHVLGKEKIASMLPEQLYFLQSPPEEEPEYHPDASAQESF
Sbjct: 83  KIMAHERREKVKRSVSPLLSTHVLGKEKIASMLPEQLYFLQSPPEEEPEYHPDASAQESF 142

Query: 182 AVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITANKNYRSKTSQEGALKKMHEEEHH 361
           AVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITANKNYRSKTSQEGALKKMHEEEHH
Sbjct: 143 AVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITANKNYRSKTSQEGALKKMHEEEHH 202

Query: 362 XXXXXXXXXXXXXNEVHVAKIQQIXXXXXXXXXXHRIKMEVLNKKKMYWERKLQTFTKEW 541
                        NEVHVAKIQQI          HRIKMEVLNKKKMYWERKLQTFTKEW
Sbjct: 203 QQMSILQLQLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEW 262

Query: 542 PVSSFNRPFPNSP 580
           PVSSFNRPFPNSP
Sbjct: 263 PVSSFNRPFPNSP 275